fgsea is an R-package for fast preranked gene set enrichment analysis (GSEA). This package allows to quickly and accurately calculate arbitrarily low GSEA P-values for a collection of gene sets. P-value estimation is based on an adaptive multi-level split Monte-Carlo scheme. See the preprint for algorithmic details.
Jun 12, 2021 · Challenge Project: Functional enrichment analysis (FEA) Run workflow from start to finish (steps 1-8) on ChIP-Seq data set from Kaufman et al. (2010) Challenge project tasks. Perform functional enrichment analysis on the genes overlapping or downstream of the peak ranges discovered by the ChIP-Seq workflow.